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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
368
ChIP-seq
18
total RNA-seq
1
ATAC-seq
1
DNase-seq
1
Hi-C
1
WGBS
Assay category
368
DNA binding
18
Transcription
2
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
350
transcription factor
88
recombinant protein
62
RNA binding protein
30
chromatin remodeller
25
histone
histone modification
13
control
13
narrow histone mark
12
broad histone mark
2
other context
2
other post-translational modification
Date released
253
November, 2017
February, 2021
57
November, 2018
27
December, 2018
19
August, 2021
19
January, 2019
12
October, 2019
2
March, 2020
1
January, 2018
Available data
439
bam
411
fastq
390
bigWig
352
bed narrowPeak
334
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
32
tsv
3
tar
2
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
tagAlign
1
txt
1
vcf
Organism
390
Homo sapiens
Biosample type
806
tissue
390
cell line
213
primary cell
154
in vitro differentiated cells
1
stem cell
Organ
314
liver
54
blood
54
bodily fluid
epithelium
12
kidney
12
pancreas
8
embryo
Project
390
AMP
Genome assembly (visualization)
385
hg19
329
GRCh38
Lab
379
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
1
inconsistent control
Audit category:
11
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
February, 2021
organ_slims!
epithelium
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
390 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
308
5
1
GM12878
53
1
H1-hESC
8
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
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