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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
357
ChIP-seq
104
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
357
DNA binding
104
Transcription
4
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
305
transcription factor
88
recombinant protein
53
RNA binding protein
36
histone
36
histone modification
20
chromatin remodeller
18
broad histone mark
18
narrow histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
83
February, 2021
45
November, 2018
22
August, 2021
20
October, 2019
12
November, 2019
7
March, 2020
5
January, 2019
5
May, 2021
Available data
522
bam
467
bigWig
367
fastq
350
bed narrowPeak
301
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
467
Homo sapiens
Biosample type
1772
tissue
613
primary cell
467
cell line
259
in vitro differentiated cells
3
stem cell
Organ
332
liver
56
artery
56
blood vessel
56
heart
56
pancreas
56
vasculature
55
blood
bodily fluid
50
epithelium
12
kidney
8
embryo
Project
463
AMP
4
T1D
Genome assembly (visualization)
462
hg19
400
GRCh38
Lab
453
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
58
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
organ_slims!
bodily fluid
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
467 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
smooth muscle cell of the coronary artery
4
52
EndoC_BH1
13
33
2
H1-hESC
8
Panc1
6
1
1
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