Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
65
total RNA-seq
1
ATAC-seq
1
DNase-seq
1
Hi-C
Assay category
72
DNA binding
65
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
63
transcription factor
10
RNA binding protein
10
chromatin remodeller
7
histone
7
histone modification
7
recombinant protein
4
narrow histone mark
3
broad histone mark
Date released
57
February, 2021
27
December, 2018
18
October, 2019
15
January, 2019
12
November, 2018
8
August, 2021
2
March, 2020
1
January, 2018
Available data
165
bam
140
bigWig
81
bed narrowPeak
69
tsv
61
bigBed narrowPeak
60
fastq
8
tagAlign
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
1
txt
Organism
140
Homo sapiens
Biosample type
1507
tissue
381
primary cell
239
in vitro differentiated cells
140
cell line
3
stem cell
Organ
liver
56
artery
56
blood vessel
56
heart
56
pancreas
56
vasculature
55
blood
55
bodily fluid
epithelium
12
kidney
8
embryo
Project
140
AMP
Genome assembly (visualization)
140
hg19
139
GRCh38
Lab
140
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
organ_slims!
epithelium
liver
lymph node
BIOSAMPLE
ASSAY
140 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
H1-hESC
8
Panc1
6
1
1
RCC 7860 HIF1a re-expression
3
1
+ See 4 more…
See all biosamples
Download