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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
368
ChIP-seq
104
total RNA-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
368
DNA binding
104
Transcription
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
356
transcription factor
88
recombinant protein
63
RNA binding protein
37
histone
37
histone modification
chromatin remodeller
19
narrow histone mark
18
broad histone mark
control
2
other context
2
other post-translational modification
Date released
240
November, 2017
83
February, 2021
50
November, 2018
25
December, 2018
22
August, 2021
20
October, 2019
14
January, 2019
12
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
479
bigWig
476
bam
374
bed narrowPeak
335
fastq
325
bigBed narrowPeak
119
tsv
55
bed broadPeak
55
bigBed broadPeak
16
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
479
Homo sapiens
Biosample type
1770
tissue
602
primary cell
479
cell line
256
in vitro differentiated cells
3
stem cell
Organ
299
liver
56
artery
56
blood vessel
56
heart
56
pancreas
56
vasculature
50
epithelium
45
blood
45
bodily fluid
12
kidney
8
embryo
Project
475
AMP
4
T1D
Genome assembly (visualization)
474
hg19
426
GRCh38
Lab
465
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
58
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
chromatin remodeller
control
BIOSAMPLE
ASSAY
479 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
293
5
1
smooth muscle cell of the coronary artery
4
52
EndoC_BH1
13
33
2
GM12878
44
1
H1-hESC
8
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