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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
420
ChIP-seq
5
total RNA-seq
1
Hi-C
Assay category
420
DNA binding
5
Transcription
1
3D chromatin structure
Target of assay
337
transcription factor
82
recombinant protein
63
RNA binding protein
62
control
30
chromatin remodeller
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
60
November, 2018
28
December, 2018
23
January, 2019
Available data
487
bam
439
bigWig
427
fastq
390
bed narrowPeak
355
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
41
tsv
12
tagAlign
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bedMethyl
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
426
Homo sapiens
Biosample type
426
cell line
366
tissue
362
primary cell
141
in vitro differentiated cells
4
stem cell
Organ
366
liver
60
blood
60
bodily fluid
Project
426
AMP
Genome assembly (visualization)
367
hg19
320
GRCh38
Lab
426
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed bedMethyl
zippedFastqFolder
month_released!
February, 2021
BIOSAMPLE
ASSAY
426 results
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ChIP-seq
total RNA-seq
Hi-C
cell line
HepG2
360
5
1
GM12878
60
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