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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
390
ChIP-seq
5
total RNA-seq
1
Hi-C
1
WGBS
Assay category
390
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
337
transcription factor
82
recombinant protein
63
RNA binding protein
62
control
chromatin remodeller
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
300
November, 2017
54
November, 2018
26
December, 2018
17
January, 2019
Available data
552
bam
492
bigWig
397
fastq
374
bed narrowPeak
325
bigBed narrowPeak
118
tsv
55
bed broadPeak
55
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
hdf5
1
txt
1
vcf
Organism
397
Homo sapiens
Biosample type
408
primary cell
397
cell line
375
tissue
138
in vitro differentiated cells
4
stem cell
Organ
347
liver
50
blood
50
bodily fluid
Project
397
AMP
Genome assembly (visualization)
337
hg19
293
GRCh38
Lab
397
AMP-T2D consortium
Audit category:
7
missing controlled_by
Audit category:
15
inconsistent control read length
files.file_type!
hdf5
month_released!
May, 2020
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
397 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
340
5
1
1
GM12878
50
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