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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
308
ChIP-seq
5
total RNA-seq
1
Hi-C
1
WGBS
Assay category
308
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
337
transcription factor
recombinant protein
63
RNA binding protein
62
control
chromatin remodeller
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
234
November, 2017
38
November, 2018
26
December, 2018
17
January, 2019
Available data
463
bam
404
bigWig
315
fastq
286
bed narrowPeak
244
bigBed narrowPeak
119
tsv
55
bed broadPeak
55
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
txt
1
vcf
Organism
315
Homo sapiens
Biosample type
408
primary cell
369
tissue
315
cell line
138
in vitro differentiated cells
4
stem cell
Organ
265
liver
50
blood
50
bodily fluid
Project
315
AMP
Genome assembly (visualization)
259
hg19
212
GRCh38
Lab
315
AMP-T2D consortium
Audit category:
6
missing controlled_by
Audit category:
14
inconsistent control read length
files.file_type!
txt
target.investigated_as!
chromatin remodeller
recombinant protein
BIOSAMPLE
ASSAY
315 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
258
5
1
1
GM12878
50
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