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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
360
ChIP-seq
5
total RNA-seq
1
Hi-C
Assay category
360
DNA binding
5
Transcription
1
3D chromatin structure
Target of assay
280
transcription factor
66
recombinant protein
59
control
42
RNA binding protein
23
chromatin remodeller
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
November, 2018
28
December, 2018
23
January, 2019
Available data
521
bam
465
bigWig
366
fastq
348
bed narrowPeak
299
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
1
txt
1
vcf
Organism
366
Homo sapiens
Biosample type
408
primary cell
366
cell line
350
tissue
141
in vitro differentiated cells
4
stem cell
Organ
321
liver
45
blood
45
bodily fluid
Project
366
AMP
Genome assembly (visualization)
313
hg19
264
GRCh38
Lab
366
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
lab.title!
Mark McCarthy, Oxford
month_released!
November, 2018
BIOSAMPLE
ASSAY
366 results
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ChIP-seq
total RNA-seq
Hi-C
cell line
HepG2
315
5
1
GM12878
45
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