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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 420ChIP-seq
  • 5total RNA-seq
  • 1Hi-C
  • 1WGBS
Assay category
  • 420DNA binding
  • 5Transcription
  • 13D chromatin structure
  • 1DNA methylation
Target of assay
  • 337transcription factor
  • 82recombinant protein
  • 63RNA binding protein
  • 62control
  • 30chromatin remodeller
  • 16histone
  • 16histone modification
  • 8broad histone mark
  • 8narrow histone mark
  • 2other context
  • 2other post-translational modification
Date released
  • 315November, 2017
  • 61November, 2018
  • 28December, 2018
  • 23January, 2019
Available data
  • 582bam
  • 522bigWig
  • 427fastq
  • 404bed narrowPeak
  • 355bigBed narrowPeak
  • 119tsv
  • 59bed broadPeak
  • 59bigBed broadPeak
  • 20tagAlign
  • 3bed bed3+
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hdf5
  • 1txt
  • 1vcf
Organism
  • 427Homo sapiens
Biosample type
  • 427cell line
  • 409primary cell
  • 377tissue
  • 141in vitro differentiated cells
  • 4stem cell
Organ
  • 367liver
  • 60blood
  • 60bodily fluid
Project
  • 427AMP
Genome assembly (visualization)
  • 367hg19
  • 321GRCh38
Lab
  • 427AMP-T2D consortium
Audit category:
  • 1inconsistent control
Audit category:
  • 13missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

427 results

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ChIP-seq
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cell line
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