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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
total RNA-seq
5
pCHi-C
1
ATAC-seq
Assay category
104
Transcription
1
DNA accessibility
Date released
78
February, 2021
9
March, 2020
8
August, 2021
5
January, 2019
4
May, 2021
4
October, 2019
1
May, 2020
1
November, 2019
Available data
580
bam
506
bigWig
425
fastq
388
bed narrowPeak
353
bigBed narrowPeak
110
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
Organism
110
Homo sapiens
Biosample type
1075
tissue
168
primary cell
131
in vitro differentiated cells
110
cell line
4
stem cell
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
35
epithelium
34
pancreas
8
embryo
6
kidney
6
liver
1
mammary gland
Project
108
AMP
2
T1D
Genome assembly (visualization)
105
hg19
104
GRCh38
Lab
110
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
39
inconsistent ontology term
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
110 results
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total RNA-seq
pCHi-C
ATAC-seq
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
1
H1-hESC
8
HepG2
5
1
RCC 7860 vector
1
1
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