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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
387
ChIP-seq
108
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
387
DNA binding
110
Transcription
31
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
274
transcription factor
89
recombinant protein
77
control
54
RNA binding protein
37
histone
37
histone modification
19
broad histone mark
19
chromatin remodeller
18
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
271
November, 2017
96
February, 2021
44
August, 2021
40
November, 2018
30
October, 2019
21
May, 2021
16
November, 2019
11
March, 2020
10
January, 2019
6
February, 2023
6
November, 2020
2
December, 2018
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
479
bam
425
bigWig
323
fastq
313
bed narrowPeak
264
bigBed narrowPeak
114
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
1
txt
1
vcf
Organism
554
Homo sapiens
Biosample type
2575
tissue
807
primary cell
558
cell line
392
in vitro differentiated cells
10
stem cell
Organ
342
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
19
kidney
16
blood
16
bodily fluid
8
embryo
1
mammary gland
Project
547
AMP
9
T1D
2
community
Genome assembly (visualization)
434
hg19
369
GRCh38
Lab
511
AMP-T2D consortium
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
92
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
6
missing controlled_by
Audit category:
19
inconsistent control read length
1
inconsistent assembly
files.run_type!
paired-ended
BIOSAMPLE
ASSAY
558 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
326
9
1
2
2
1
1
EndoC_BH1
15
33
19
6
3
1
2
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
15
1
Panc1
13
1
1
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