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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
438
ChIP-seq
35
total RNA-seq
20
ATAC-seq
6
MeRIP-seq
5
STARR-seq
5
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
whole genome sequencing assay
Assay category
438
DNA binding
35
Transcription
22
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
356
transcription factor
89
recombinant protein
80
control
65
RNA binding protein
38
histone
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
300
November, 2017
February, 2021
61
November, 2018
41
August, 2021
28
December, 2018
23
October, 2019
22
January, 2019
20
May, 2021
10
March, 2020
6
February, 2023
6
November, 2019
6
November, 2020
1
January, 2018
1
May, 2020
1
October, 2022
Available data
452
bam
411
fastq
402
bigWig
355
bed narrowPeak
335
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
41
tsv
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
tagAlign
1
txt
1
vcf
Organism
524
Homo sapiens
Biosample type
1603
tissue
803
primary cell
526
cell line
256
in vitro differentiated cells
6
stem cell
Organ
381
liver
60
blood
60
bodily fluid
47
pancreas
41
epithelium
19
kidney
8
embryo
1
mammary gland
Project
519
AMP
7
T1D
Genome assembly (visualization)
400
hg19
340
GRCh38
Lab
484
AMP-T2D consortium
31
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
Anna Gloyn, Oxford
Audit category:
54
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
lab.title!
Anna Gloyn, Oxford
month_released!
February, 2021
organ_slims!
spinal cord
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
526 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
STARR-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
whole genome sequencing assay
cell line
HepG2
360
14
2
1
2
1
1
GM12878
59
1
EndoC_BH1
3
7
19
6
1
3
2
2
1
H1-hESC
8
Panc1
6
1
1
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