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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
376
ChIP-seq
104
total RNA-seq
13
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
whole genome sequencing assay
Assay category
376
DNA binding
104
Transcription
15
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
347
transcription factor
recombinant protein
80
control
59
RNA binding protein
36
histone
36
histone modification
24
chromatin remodeller
19
broad histone mark
17
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
249
November, 2017
96
February, 2021
45
November, 2018
44
August, 2021
28
December, 2018
January, 2019
23
October, 2019
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
1
January, 2018
1
May, 2020
1
October, 2022
Available data
465
bam
409
bigWig
322
fastq
300
bed narrowPeak
259
bigBed narrowPeak
110
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
525
Homo sapiens
Biosample type
2730
tissue
882
primary cell
527
cell line
262
in vitro differentiated cells
8
stem cell
Organ
314
liver
71
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
58
epithelium
43
blood
43
bodily fluid
12
kidney
8
embryo
1
mammary gland
Project
519
AMP
8
T1D
Genome assembly (visualization)
420
hg19
351
GRCh38
Lab
482
AMP-T2D consortium
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
Anna Gloyn, Oxford
Audit category:
64
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
lab.title!
Anna Gloyn, Oxford
month_released!
January, 2019
May, 2021
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
527 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
pCHi-C
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
whole genome sequencing assay
cell line
HepG2
296
9
1
2
2
2
1
1
smooth muscle cell of the coronary artery
6
52
8
EndoC_BH1
14
29
3
6
1
3
2
2
1
GM12878
42
1
Panc1
13
1
1
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