Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
366
ChIP-seq
109
total RNA-seq
27
ATAC-seq
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
Capture-C
2
DNase-seq
2
HiChIP
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
whole genome sequencing assay
Assay category
366
DNA binding
109
Transcription
29
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
361
transcription factor
89
recombinant protein
control
65
RNA binding protein
37
histone
histone modification
30
chromatin remodeller
19
broad histone mark
18
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
244
November, 2017
93
February, 2021
58
November, 2018
37
August, 2021
28
December, 2018
20
May, 2021
19
January, 2019
14
October, 2019
March, 2020
6
February, 2023
4
November, 2019
3
November, 2020
1
January, 2018
1
May, 2020
1
October, 2022
Available data
467
bam
466
bigWig
369
bed narrowPeak
349
fastq
335
bigBed narrowPeak
110
tsv
45
bed broadPeak
45
bigBed broadPeak
5
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
527
Homo sapiens
Biosample type
1924
tissue
815
primary cell
529
cell line
237
in vitro differentiated cells
1
stem cell
Organ
323
liver
64
artery
64
blood vessel
64
heart
64
vasculature
58
epithelium
58
pancreas
54
blood
54
bodily fluid
14
kidney
8
embryo
Project
524
AMP
5
T1D
Genome assembly (visualization)
474
hg19
428
GRCh38
Lab
494
AMP-T2D consortium
27
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Anna Gloyn, Oxford
Audit category:
66
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
lab.title!
Anna Gloyn, Oxford
month_released!
March, 2020
target.investigated_as!
control
histone modification
BIOSAMPLE
ASSAY
529 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
MeRIP-seq
Capture-C
DNase-seq
HiChIP
pCHi-C
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
whole genome sequencing assay
cell line
HepG2
300
14
1
2
2
2
1
1
smooth muscle cell of the coronary artery
4
52
8
EndoC_BH1
1
31
17
1
3
3
2
2
1
GM12878
53
1
H1-hESC
8
+ See 9 more…
See all biosamples
Download