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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
22
total RNA-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
35
DNA binding
22
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
25
transcription factor
7
RNA binding protein
7
control
6
chromatin remodeller
4
histone
4
histone modification
3
narrow histone mark
broad histone mark
Date released
307
November, 2017
96
February, 2021
61
November, 2018
43
August, 2021
28
December, 2018
26
October, 2019
23
January, 2019
21
May, 2021
11
March, 2020
10
November, 2019
6
February, 2023
6
November, 2020
1
January, 2018
1
May, 2020
1
October, 2022
Available data
41
bigWig
31
bam
28
bed narrowPeak
23
fastq
22
tsv
15
bigBed narrowPeak
1
bedpe bed3+
1
hic
1
vcf
Organism
66
Homo sapiens
Biosample type
232
tissue
66
cell line
35
in vitro differentiated cells
3
primary cell
Organ
35
liver
18
blood
18
bodily fluid
8
embryo
2
epithelium
2
kidney
2
pancreas
Project
66
AMP
Genome assembly (visualization)
42
hg19
28
GRCh38
Lab
33
AMP-T2D consortium
33
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
lab.title!
Anna Gloyn, Oxford
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
total RNA-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
17
14
2
1
1
GM12878
18
H1-hESC
8
EndoC_BH1
2
HEK293T
2
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