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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
46
ChIP-seq
27
ATAC-seq
6
MeRIP-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
DNase-seq
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
Assay category
99
Transcription
46
DNA binding
29
DNA accessibility
2
3D chromatin structure
Target of assay
19
histone
19
histone modification
17
control
13
transcription factor
10
broad histone mark
9
narrow histone mark
7
recombinant protein
3
nucleotide modification
1
RNA binding protein
Date released
94
February, 2021
30
October, 2019
21
May, 2021
16
November, 2019
13
August, 2021
11
March, 2020
6
February, 2023
6
November, 2020
1
October, 2022
Available data
156
bam
135
bigWig
104
tsv
42
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
Organism
196
Homo sapiens
Biosample type
2416
tissue
1066
primary cell
379
in vitro differentiated cells
198
cell line
8
stem cell
Organ
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
189
AMP
9
T1D
Genome assembly (visualization)
145
hg19
142
GRCh38
Lab
184
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
Anna Gloyn, Oxford
Audit category:
92
inconsistent ontology term
Audit category:
1
inconsistent assembly
lab.title!
Anna Gloyn, Oxford
organ_slims!
blood
liver
BIOSAMPLE
ASSAY
198 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
STARR-seq
Capture-C
DNase-seq
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
cell line
EndoC_BH1
33
15
19
6
3
2
1
2
1
smooth muscle cell of the coronary artery
52
6
8
Panc1
13
1
1
H1-hESC
8
RCC 7860 HIF1a re-expression
1
4
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