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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
4
total RNA-seq
2
DNase-seq
1
Hi-C
Assay category
19
DNA binding
4
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
9
control
7
histone
7
histone modification
7
recombinant protein
7
transcription factor
broad histone mark
3
narrow histone mark
Date released
307
November, 2017
96
February, 2021
61
November, 2018
43
August, 2021
28
December, 2018
26
October, 2019
23
January, 2019
21
May, 2021
11
March, 2020
10
November, 2019
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
25
bam
17
bigWig
12
bed narrowPeak
5
bigBed narrowPeak
4
tsv
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
26
Homo sapiens
Biosample type
203
tissue
26
cell line
22
primary cell
8
in vitro differentiated cells
Organ
15
kidney
11
pancreas
2
epithelium
Project
26
AMP
Genome assembly (visualization)
17
GRCh38
17
hg19
Lab
26
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
Audit category:
1
inconsistent assembly
lab.title!
Katalin Susztak, Upenn
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
cell line
Panc1
9
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
glomerular visceral epithelial cell
1
1
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