Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
total RNA-seq
18
ATAC-seq
15
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
32
Transcription
19
DNA accessibility
15
DNA binding
1
3D chromatin structure
Target of assay
9
control
9
histone
9
histone modification
5
narrow histone mark
4
broad histone mark
3
nucleotide modification
Date released
26
February, 2021
21
May, 2021
November, 2019
15
October, 2019
6
November, 2020
5
March, 2020
2
August, 2021
1
February, 2023
Available data
48
bam
44
bigWig
33
tsv
9
bed narrowPeak
7
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
75
Homo sapiens
Biosample type
415
tissue
346
primary cell
76
cell line
3
in vitro differentiated cells
Organ
319
liver
76
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
63
epithelium
61
blood
61
bodily fluid
12
kidney
8
embryo
1
mammary gland
Project
72
AMP
4
T1D
Genome assembly (visualization)
44
hg19
42
GRCh38
Lab
70
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
60
inconsistent ontology term
Audit category:
1
inconsistent assembly
lab.title!
Kyle Gaulton, UCSD
month_released!
November, 2019
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
76 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
32
18
2
6
2
1
Panc1
13
1
1
Download