Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
96
ChIP-seq
28
ATAC-seq
4
pCHi-C
2
Capture-C
2
DNase-seq
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
Assay category
99
Transcription
96
DNA binding
30
DNA accessibility
2
3D chromatin structure
Target of assay
64
transcription factor
20
control
20
histone
20
histone modification
11
RNA binding protein
broad histone mark
10
chromatin remodeller
10
narrow histone mark
7
recombinant protein
Date released
94
February, 2021
27
December, 2018
26
October, 2019
21
May, 2021
18
January, 2019
15
November, 2018
11
March, 2020
10
August, 2021
10
November, 2019
1
February, 2023
1
January, 2018
1
October, 2022
Available data
206
bam
181
bigWig
104
tsv
87
bed narrowPeak
60
fastq
59
bigBed narrowPeak
8
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
Organism
233
Homo sapiens
Biosample type
1847
tissue
453
primary cell
286
in vitro differentiated cells
235
cell line
7
stem cell
Organ
liver
76
pancreas
67
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
17
kidney
8
embryo
1
mammary gland
Project
231
AMP
4
T1D
Genome assembly (visualization)
191
hg19
187
GRCh38
Lab
235
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
0
Stephen Parker, UMich
Audit category:
79
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
organ_slims!
liver
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
235 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
Capture-C
DNase-seq
Hi-C
CRISPR genome editing followed by sgRNA sequencing
MPRA
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
33
9
19
2
1
1
GM12878
60
1
Panc1
9
1
1
H1-hESC
8
+ See 10 more…
See all biosamples
Download