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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
19
ATAC-seq
15
ChIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
33
Transcription
19
DNA accessibility
15
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
16
November, 2019
5
March, 2020
2
August, 2021
1
February, 2023
Available data
49
bam
48
bigWig
34
tsv
14
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
70
Homo sapiens
Biosample type
218
primary cell
71
cell line
24
in vitro differentiated cells
14
tissue
Organ
368
liver
86
pancreas
73
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
kidney
8
embryo
1
mammary gland
Project
67
AMP
4
T1D
Genome assembly (visualization)
50
hg19
47
GRCh38
Lab
71
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
70
inconsistent ontology term
organ_slims!
kidney
target.investigated_as!
other context
BIOSAMPLE
ASSAY
71 results
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total RNA-seq
ATAC-seq
ChIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
cell line
EndoC_BH1
33
19
15
2
1
1
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