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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
439
ChIP-seq
96
total RNA-seq
29
ATAC-seq
6
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
DNase-seq
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
439
DNA binding
98
Transcription
31
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
325
transcription factor
89
recombinant protein
76
control
62
RNA binding protein
35
histone
35
histone modification
28
chromatin remodeller
18
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
96
February, 2021
61
November, 2018
August, 2021
30
October, 2019
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
547
bam
473
bigWig
399
fastq
363
bed narrowPeak
328
bigBed narrowPeak
102
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
Organism
580
Homo sapiens
Biosample type
2532
tissue
1078
primary cell
584
cell line
352
in vitro differentiated cells
10
stem cell
Organ
369
liver
84
pancreas
71
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
34
blood
34
bodily fluid
17
kidney
1
mammary gland
Project
573
AMP
9
T1D
2
community
Genome assembly (visualization)
480
hg19
429
GRCh38
Lab
577
AMP-T2D consortium
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
83
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
August, 2021
December, 2018
November, 2020
organ_slims!
ovary
BIOSAMPLE
ASSAY
584 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
DNase-seq
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
cell line
HepG2
360
5
1
2
1
EndoC_BH1
15
33
19
3
1
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
33
1
Panc1
13
1
1
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