Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
355
ChIP-seq
44
total RNA-seq
20
ATAC-seq
6
MeRIP-seq
6
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
355
DNA binding
46
Transcription
22
DNA accessibility
3
3D chromatin structure
Target of assay
250
transcription factor
73
recombinant protein
71
control
35
RNA binding protein
34
histone
34
histone modification
18
broad histone mark
16
narrow histone mark
15
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
315
November, 2017
November, 2018
August, 2021
30
February, 2021
30
October, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
5
January, 2019
2
March, 2023
1
December, 2018
1
May, 2020
1
October, 2022
Available data
402
bam
344
bigWig
321
fastq
280
bed narrowPeak
257
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
50
tsv
14
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
1
txt
Organism
441
Homo sapiens
Biosample type
2395
tissue
1044
primary cell
445
cell line
352
in vitro differentiated cells
10
stem cell
Organ
324
liver
90
pancreas
77
epithelium
66
artery
blood vessel
66
heart
66
vasculature
46
blood
bodily fluid
17
kidney
1
mammary gland
Project
434
AMP
9
T1D
2
community
Genome assembly (visualization)
346
hg19
293
GRCh38
Lab
432
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
89
inconsistent ontology term
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
1
inconsistent assembly
month_released!
August, 2021
November, 2018
organ_slims!
blood vessel
bodily fluid
BIOSAMPLE
ASSAY
445 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
HepG2
315
5
1
2
1
EndoC_BH1
15
33
19
6
3
1
2
1
Panc1
13
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
+ See 9 more…
See all biosamples
Download