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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
382
ChIP-seq
44
total RNA-seq
20
ATAC-seq
6
MeRIP-seq
6
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
382
DNA binding
46
Transcription
22
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
295
transcription factor
89
recombinant protein
71
control
54
RNA binding protein
34
histone
34
histone modification
20
chromatin remodeller
broad histone mark
16
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
307
November, 2017
46
November, 2018
August, 2021
30
February, 2021
26
October, 2019
21
May, 2021
11
March, 2020
10
November, 2019
6
February, 2023
6
November, 2020
5
January, 2019
2
March, 2023
1
December, 2018
1
May, 2020
1
October, 2022
Available data
430
bam
372
bigWig
359
fastq
308
bed narrowPeak
291
bigBed narrowPeak
51
bed broadPeak
51
bigBed broadPeak
50
tsv
8
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
Organism
469
Homo sapiens
Biosample type
2154
tissue
933
primary cell
473
cell line
303
in vitro differentiated cells
9
stem cell
Organ
362
liver
80
pancreas
71
epithelium
66
artery
blood vessel
66
heart
66
vasculature
61
blood
bodily fluid
17
kidney
1
mammary gland
Project
462
AMP
9
T1D
2
community
Genome assembly (visualization)
371
hg19
322
GRCh38
Lab
460
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
83
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
20
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
August, 2021
organ_slims!
blood vessel
bodily fluid
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
473 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
cell line
HepG2
352
5
1
2
1
1
EndoC_BH1
9
33
19
6
3
1
2
1
Panc1
9
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
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