Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
ChIP-seq
3
MeRIP-seq
Assay category
145
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
90
November, 2017
24
November, 2018
9
January, 2019
9
October, 2019
5
August, 2021
3
February, 2021
3
November, 2019
3
November, 2020
2
December, 2018
Available data
140
bam
125
fastq
76
bigWig
63
bed narrowPeak
61
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
4
tagAlign
1
tar
Organism
148
Homo sapiens
Biosample type
215
tissue
148
cell line
48
in vitro differentiated cells
43
primary cell
1
stem cell
Organ
114
liver
16
blood
16
bodily fluid
12
pancreas
6
epithelium
3
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
148
AMP
Genome assembly (visualization)
75
hg19
58
GRCh38
Lab
140
AMP-T2D consortium
5
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
9
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
month_released!
February, 2020
organ_slims!
vein
BIOSAMPLE
ASSAY
148 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
MeRIP-seq
cell line
HepG2
114
GM12878
16
EndoC_BH1
3
3
Panc1
6
smooth muscle cell of the coronary artery
2
+ See 4 more…
See all biosamples
Download