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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
Assay category
59
DNA binding
Target of assay
342
transcription factor
89
recombinant protein
77
control
59
RNA binding protein
37
histone
37
histone modification
24
chromatin remodeller
19
broad histone mark
18
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
34
November, 2017
21
November, 2018
January, 2019
2
December, 2018
1
August, 2021
1
November, 2019
Available data
58
bam
57
bed narrowPeak
57
bigWig
57
fastq
55
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
59
Homo sapiens
Biosample type
59
cell line
25
tissue
11
in vitro differentiated cells
8
primary cell
Organ
54
liver
4
blood
4
bodily fluid
1
epithelium
1
pancreas
Project
59
AMP
Genome assembly (visualization)
56
hg19
52
GRCh38
Lab
58
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
month_released!
February, 2021
January, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
cell line
HepG2
54
GM12878
4
EndoC_BH1
1
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