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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
71
ChIP-seq
28
ATAC-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
3
STARR-seq
2
Capture-C
2
DNase-seq
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
101
Transcription
71
DNA binding
30
DNA accessibility
2
3D chromatin structure
Target of assay
50
transcription factor
control
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
7
recombinant protein
5
RNA binding protein
4
chromatin remodeller
3
nucleotide modification
Date released
91
February, 2021
27
December, 2018
21
May, 2021
21
October, 2019
January, 2019
14
November, 2019
13
August, 2021
12
November, 2018
11
March, 2020
6
February, 2023
3
November, 2020
2
March, 2023
1
January, 2018
1
October, 2022
Available data
181
bam
175
bigWig
104
tsv
81
bed narrowPeak
47
bigBed narrowPeak
39
fastq
5
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
Organism
219
Homo sapiens
Biosample type
2269
tissue
1040
primary cell
343
in vitro differentiated cells
223
cell line
9
stem cell
Organ
liver
81
pancreas
74
epithelium
64
artery
64
blood vessel
64
heart
64
vasculature
40
blood
40
bodily fluid
16
kidney
8
embryo
1
mammary gland
Project
212
AMP
9
T1D
2
community
Genome assembly (visualization)
185
hg19
181
GRCh38
Lab
210
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
84
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
month_released!
January, 2019
organ_slims!
liver
target.investigated_as!
control
BIOSAMPLE
ASSAY
223 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
MeRIP-seq
STARR-seq
Capture-C
DNase-seq
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1
33
13
19
3
3
2
1
2
1
smooth muscle cell of the coronary artery
52
4
8
GM12878
39
1
Panc1
7
1
1
H1-hESC
8
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