Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
ChIP-seq
57
total RNA-seq
6
MeRIP-seq
6
pCHi-C
5
ATAC-seq
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
417
DNA binding
59
Transcription
7
DNA accessibility
4
3D chromatin structure
1
DNA sequencing
Target of assay
300
transcription factor
78
control
73
recombinant protein
44
RNA binding protein
37
histone
37
histone modification
23
chromatin remodeller
19
broad histone mark
18
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
315
November, 2017
November, 2018
44
August, 2021
30
February, 2021
30
October, 2019
28
December, 2018
23
January, 2019
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
450
bam
404
bigWig
366
fastq
335
bed narrowPeak
299
bigBed narrowPeak
63
tsv
59
bed broadPeak
59
bigBed broadPeak
14
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
1
txt
1
vcf
Organism
510
Homo sapiens
Biosample type
2576
tissue
844
primary cell
514
cell line
262
in vitro differentiated cells
10
stem cell
Organ
355
liver
71
pancreas
66
artery
66
blood vessel
66
heart
vasculature
58
epithelium
46
blood
46
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
504
AMP
8
T1D
2
community
Genome assembly (visualization)
407
hg19
338
GRCh38
Lab
467
AMP-T2D consortium
34
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
71
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
1
inconsistent assembly
month_released!
May, 2021
November, 2018
organ_slims!
intestine
vasculature
BIOSAMPLE
ASSAY
514 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
MeRIP-seq
pCHi-C
ATAC-seq
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
333
14
2
1
2
2
1
EndoC_BH1
14
29
6
3
1
3
2
2
1
GM12878
45
1
Panc1
13
1
1
H1-hESC
8
+ See 13 more…
See all biosamples
Download