Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
418
ChIP-seq
109
total RNA-seq
13
ATAC-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
418
DNA binding
111
Transcription
15
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
361
transcription factor
89
recombinant protein
83
control
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
broad histone mark
18
narrow histone mark
nucleotide modification
2
other context
2
other post-translational modification
Date released
281
November, 2017
96
February, 2021
43
August, 2021
40
November, 2018
30
October, 2019
26
December, 2018
May, 2021
17
January, 2019
15
November, 2019
11
March, 2020
6
February, 2023
3
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
513
bam
454
bigWig
364
fastq
340
bed narrowPeak
294
bigBed narrowPeak
115
tsv
55
bed broadPeak
55
bigBed broadPeak
20
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
2
tar
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
569
Homo sapiens
Biosample type
2707
tissue
813
primary cell
573
cell line
256
in vitro differentiated cells
10
stem cell
Organ
347
liver
67
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
54
epithelium
51
blood
51
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
563
AMP
8
T1D
2
community
Genome assembly (visualization)
463
hg19
401
GRCh38
Lab
530
AMP-T2D consortium
33
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
67
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
11
missing controlled_by
Audit category:
20
inconsistent control read length
5
inconsistent control run_type
1
inconsistent assembly
month_released!
May, 2021
September, 2020
target.investigated_as!
RNA binding protein
nucleotide modification
BIOSAMPLE
ASSAY
573 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
MeRIP-seq
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
324
14
1
2
2
2
1
1
smooth muscle cell of the coronary artery
6
52
8
EndoC_BH1
13
29
3
1
3
3
2
2
1
GM12878
50
1
Panc1
13
1
1
+ See 14 more…
See all biosamples
Download