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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
Assay category
28
DNA binding
Target of assay
360
transcription factor
89
recombinant protein
81
control
64
RNA binding protein
30
chromatin remodeller
28
histone
28
histone modification
15
narrow histone mark
13
broad histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
15
November, 2017
November, 2019
7
October, 2019
3
August, 2021
1
January, 2019
1
March, 2020
1
May, 2021
Available data
27
bigWig
25
bam
25
bed narrowPeak
20
bigBed narrowPeak
16
fastq
14
bed broadPeak
14
bigBed broadPeak
11
tagAlign
Organism
28
Homo sapiens
Biosample type
627
tissue
237
primary cell
112
in vitro differentiated cells
28
cell line
2
stem cell
Organ
18
liver
9
pancreas
2
epithelium
1
blood
1
bodily fluid
Project
26
AMP
2
T1D
Genome assembly (visualization)
27
hg19
22
GRCh38
Lab
25
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
November, 2019
organ_slims!
lymph node
spinal cord
BIOSAMPLE
ASSAY
28 results
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ChIP-seq
cell line
HepG2
18
Panc1
7
EndoC_BH1
2
GM12878
1
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