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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
Assay category
33
DNA binding
Target of assay
354
transcription factor
82
recombinant protein
74
control
65
RNA binding protein
31
histone
31
histone modification
30
chromatin remodeller
16
narrow histone mark
15
broad histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
17
November, 2017
10
November, 2019
October, 2019
3
August, 2021
1
January, 2019
1
March, 2020
1
May, 2021
Available data
33
bigWig
31
bed narrowPeak
30
bam
18
fastq
16
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
11
tagAlign
Organism
33
Homo sapiens
Biosample type
463
tissue
216
primary cell
112
in vitro differentiated cells
33
cell line
2
stem cell
Organ
20
liver
12
epithelium
12
pancreas
1
blood
1
bodily fluid
Project
31
AMP
2
T1D
Genome assembly (visualization)
33
hg19
28
GRCh38
Lab
30
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
12
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
month_released!
October, 2019
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
cell line
HepG2
20
EndoC_BH1
12
GM12878
1
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