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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
303
ChIP-seq
Assay category
303
DNA binding
Target of assay
303
transcription factor
82
recombinant protein
74
control
55
RNA binding protein
37
histone
37
histone modification
20
chromatin remodeller
19
broad histone mark
18
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
241
November, 2017
45
November, 2018
11
August, 2021
5
February, 2021
1
November, 2019
Available data
298
bigWig
294
bed narrowPeak
291
bam
286
fastq
277
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
5
tagAlign
3
tar
Organism
303
Homo sapiens
Biosample type
303
cell line
93
tissue
49
in vitro differentiated cells
8
primary cell
Organ
297
liver
blood
51
bodily fluid
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
1
epithelium
1
pancreas
Project
303
AMP
Genome assembly (visualization)
294
hg19
251
GRCh38
Lab
292
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
month_released!
September, 2018
organ_slims!
blood
kidney
BIOSAMPLE
ASSAY
303 results
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ChIP-seq
cell line
HepG2
297
smooth muscle cell of the coronary artery
4
EndoC_BH1
1
iPSC derived cell line
1
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