Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 18ChIP-seq
  • 17total RNA-seq
  • 5STARR-seq
  • 2Capture-C
  • 1Hi-C
  • 1whole genome sequencing assay
Assay category
  • 18DNA binding
  • 17Transcription
  • 13D chromatin structure
  • 1DNA sequencing
Target of assay
  • 11transcription factor
  • 4control
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 315November, 2017
  • 96February, 2021
  • 61November, 2018
  • 44August, 2021
  • 30October, 2019
  • 28December, 2018
  • 23January, 2019
  • 21May, 2021
  • 16November, 2019
  • 11March, 2020
  • 6February, 2023
  • 6November, 2020
  • 2March, 2023
  • 1January, 2018
  • 1May, 2020
  • 1October, 2022
Available data
  • 22bigWig
  • 17tsv
  • 14bed narrowPeak
  • 8bam
  • 1bedpe bed3+
  • 1hic
  • 1vcf
Organism
  • 44Homo sapiens
Biosample type
  • 229tissue
  • 44cell line
  • 42in vitro differentiated cells
  • 4primary cell
Organ
  • 31liver
  • 8embryo
  • 2epithelium
  • 2kidney
  • 2pancreas
Project
  • 44AMP
Genome assembly (visualization)
  • 23hg19
  • 8GRCh38
Lab
  • 34Bing Ren, UCSD
  • 10AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
BIOSAMPLE
ASSAY

44 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2189211
H1-hESC8
EndoC_BH12
HEK293T2
Synthesized DNA1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego