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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
9
total RNA-seq
2
DNase-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
41
DNA binding
11
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
21
transcription factor
12
control
8
histone
8
histone modification
7
recombinant protein
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
4
narrow histone mark
Date released
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
52
bam
40
bigWig
30
bed narrowPeak
23
bigBed narrowPeak
23
fastq
9
tsv
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
53
Homo sapiens
Biosample type
249
tissue
55
cell line
35
primary cell
8
in vitro differentiated cells
2
stem cell
Organ
18
blood
18
bodily fluid
15
kidney
15
pancreas
5
liver
2
epithelium
Project
53
AMP
2
community
Genome assembly (visualization)
40
GRCh38
40
hg19
Lab
53
AMP-T2D consortium
2
Anna Gloyn, Oxford
Audit category:
13
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
November, 2017
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
cell line
GM12878
18
Panc1
13
1
1
HepG2
5
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
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