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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
6
MeRIP-seq
4
total RNA-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
76
DNA binding
4
Transcription
2
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
64
transcription factor
23
recombinant protein
21
RNA binding protein
15
control
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
nucleotide modification
Date released
300
November, 2017
96
February, 2021
54
November, 2018
44
August, 2021
30
October, 2019
26
December, 2018
21
May, 2021
17
January, 2019
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
83
bam
70
bigWig
64
bed narrowPeak
57
bigBed narrowPeak
54
fastq
4
tsv
2
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
hdf5
Organism
90
Homo sapiens
Biosample type
272
tissue
90
cell line
41
primary cell
8
in vitro differentiated cells
Organ
41
liver
21
pancreas
15
kidney
13
blood
13
bodily fluid
8
epithelium
Project
90
AMP
Genome assembly (visualization)
70
GRCh38
67
hg19
Lab
84
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
19
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent assembly
month_released!
June, 2019
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
MeRIP-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
40
1
Panc1
13
1
1
GM12878
13
EndoC_BH1
6
RCC 7860 HIF1a re-expression
4
1
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