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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
Assay category
83
DNA binding
Target of assay
357
transcription factor
89
recombinant protein
81
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
43
November, 2017
26
November, 2018
8
January, 2019
4
December, 2018
1
August, 2021
1
November, 2019
Available data
82
bam
81
bed narrowPeak
81
bigWig
81
fastq
79
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
1
tar
Organism
83
Homo sapiens
Biosample type
83
cell line
20
tissue
13
in vitro differentiated cells
9
primary cell
Organ
67
liver
15
blood
15
bodily fluid
1
epithelium
1
pancreas
Project
83
AMP
Genome assembly (visualization)
80
hg19
75
GRCh38
Lab
82
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
12
inconsistent control read length
8
inconsistent control run_type
organ_slims!
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BIOSAMPLE
ASSAY
83 results
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ChIP-seq
cell line
HepG2
67
GM12878
15
EndoC_BH1
1
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