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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 106ChIP-seq
  • 99total RNA-seq
  • 28ATAC-seq
  • 6MeRIP-seq
  • 4pCHi-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3STARR-seq
  • 2Capture-C
  • 2DNase-seq
  • 2Hi-C
  • 2HiChIP
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
Assay category
  • 106DNA binding
  • 101Transcription
  • 30DNA accessibility
  • 23D chromatin structure
Target of assay
  • 64transcription factor
  • 23control
  • 20histone
  • 20histone modification
  • 11RNA binding protein
  • 10broad histone mark
  • 10chromatin remodeller
  • 10narrow histone mark
  • 7recombinant protein
  • 3nucleotide modification
Date released
  • 94February, 2021
  • 30October, 2019
  • 27December, 2018
  • 21May, 2021
  • 18January, 2019
  • 16November, 2019
  • 15November, 2018
  • 13August, 2021
  • 11March, 2020
  • 6February, 2023
  • 6November, 2020
  • 2March, 2023
  • 1January, 2018
  • 1October, 2022
Available data
  • 216bam
  • 190bigWig
  • 104tsv
  • 96bed narrowPeak
  • 62bigBed narrowPeak
  • 60fastq
  • 8tagAlign
  • 2bed bed3+
  • 1bed broadPeak
  • 1bedpe bed3+
  • 1bigBed broadPeak
  • 1hdf5
  • 1hic
  • 1txt
Organism
  • 257Homo sapiens
Biosample type
  • 2417tissue
  • 1074primary cell
  • 379in vitro differentiated cells
  • 261cell line
  • 10stem cell
Organ
  • liver
  • 92pancreas
  • 79epithelium
  • 66artery
  • 66blood vessel
  • 66heart
  • 66vasculature
  • 61blood
  • 61bodily fluid
  • 19kidney
  • 8embryo
  • 1mammary gland
Project
  • 250AMP
  • 9T1D
  • 2community
Genome assembly (visualization)
  • 200hg19
  • 196GRCh38
Lab
  • 245AMP-T2D consortium
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 5Kyle Gaulton, UCSD
  • 3Bing Ren, UCSD
  • 2Anna Gloyn, Oxford
Audit category:
  • 92inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 1inconsistent assembly
organ_slims!
  • liver
BIOSAMPLE
ASSAY

261 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
STARR-seq
Capture-C
DNase-seq
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1153319632121
smooth muscle cell of the coronary artery6528
GM12878601
Panc11311
H1-hESC8
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