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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
total RNA-seq
27
ATAC-seq
24
ChIP-seq
6
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
Assay category
85
Transcription
28
DNA accessibility
24
DNA binding
2
3D chromatin structure
Target of assay
19
histone
19
histone modification
13
control
broad histone mark
9
narrow histone mark
5
transcription factor
3
nucleotide modification
1
RNA binding protein
Date released
92
February, 2021
21
May, 2021
11
October, 2019
10
November, 2019
6
November, 2020
5
March, 2020
2
August, 2021
1
February, 2023
Available data
119
bam
103
bigWig
86
tsv
24
bed narrowPeak
6
tagAlign
4
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
147
Homo sapiens
Biosample type
561
tissue
341
primary cell
148
cell line
3
in vitro differentiated cells
Organ
392
liver
82
pancreas
73
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
144
AMP
4
T1D
Genome assembly (visualization)
113
hg19
110
GRCh38
Lab
142
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
70
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
pituitary gland
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
148 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
cell line
EndoC_BH1
33
19
9
6
2
1
1
smooth muscle cell of the coronary artery
52
8
6
Panc1
9
1
1
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