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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
total RNA-seq
6
MeRIP-seq
5
STARR-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
110
Transcription
Target of assay
3
control
3
nucleotide modification
Date released
78
February, 2021
22
August, 2021
6
November, 2020
4
March, 2020
4
May, 2021
4
October, 2019
2
March, 2023
1
February, 2023
1
November, 2019
1
October, 2022
Available data
108
tsv
99
bam
99
bigWig
1
txt
Organism
119
Homo sapiens
Biosample type
1325
tissue
374
primary cell
138
in vitro differentiated cells
123
cell line
2
stem cell
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
41
epithelium
40
pancreas
11
liver
8
embryo
6
kidney
Project
119
AMP
2
T1D
2
community
Genome assembly (visualization)
99
GRCh38
99
hg19
Lab
101
AMP-T2D consortium
14
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
43
inconsistent ontology term
replicates.library.nucleic_acid_term_name!
DNA
BIOSAMPLE
ASSAY
123 results
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total RNA-seq
MeRIP-seq
STARR-seq
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
6
1
HepG2
9
2
H1-hESC
8
EndoC-BH1
1
1
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