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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
29
ATAC-seq
6
pCHi-C
5
total RNA-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
WGBS
1
whole genome sequencing assay
Assay category
484
DNA binding
31
DNA accessibility
5
Transcription
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
361
transcription factor
89
recombinant protein
80
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
61
November, 2018
28
December, 2018
26
October, 2019
23
January, 2019
22
August, 2021
18
February, 2021
17
May, 2021
15
November, 2019
7
March, 2020
5
February, 2023
1
January, 2018
1
May, 2020
Available data
483
bam
427
fastq
423
bigWig
404
bed narrowPeak
355
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
11
tsv
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
vcf
Organism
539
Homo sapiens
Biosample type
1452
tissue
714
primary cell
539
cell line
256
in vitro differentiated cells
8
stem cell
Organ
390
liver
61
blood
61
bodily fluid
52
pancreas
38
epithelium
14
artery
14
blood vessel
14
heart
14
vasculature
13
kidney
1
mammary gland
Project
532
AMP
7
T1D
Genome assembly (visualization)
431
hg19
365
GRCh38
Lab
514
AMP-T2D consortium
20
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
Audit category:
49
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
BIOSAMPLE
ASSAY
539 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
HiChIP
WGBS
whole genome sequencing assay
cell line
HepG2
378
1
2
5
2
1
1
GM12878
60
1
EndoC_BH1
15
19
1
3
2
2
Panc1
13
1
1
smooth muscle cell of the coronary artery
6
8
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