Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 484ChIP-seq
  • 29ATAC-seq
  • 6pCHi-C
  • 5total RNA-seq
  • 4Hi-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2DNase-seq
  • 2HiChIP
  • 1WGBS
  • 1whole genome sequencing assay
Assay category
  • 484DNA binding
  • 31DNA accessibility
  • 5Transcription
  • 43D chromatin structure
  • 1DNA methylation
  • 1DNA sequencing
Target of assay
  • 361transcription factor
  • 89recombinant protein
  • 80control
  • 65RNA binding protein
  • 38histone
  • 38histone modification
  • 30chromatin remodeller
  • 19broad histone mark
  • 19narrow histone mark
  • 2other context
  • 2other post-translational modification
Date released
  • 315November, 2017
  • 61November, 2018
  • 28December, 2018
  • 26October, 2019
  • 23January, 2019
  • 22August, 2021
  • 18February, 2021
  • 17May, 2021
  • 15November, 2019
  • 7March, 2020
  • 5February, 2023
  • 1January, 2018
  • 1May, 2020
Available data
  • 483bam
  • 427fastq
  • 423bigWig
  • 404bed narrowPeak
  • 355bigBed narrowPeak
  • 59bed broadPeak
  • 59bigBed broadPeak
  • 20tagAlign
  • 11tsv
  • 3bed bed3+
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hdf5
  • 1vcf
Organism
  • 539Homo sapiens
Biosample type
  • 1452tissue
  • 714primary cell
  • 539cell line
  • 256in vitro differentiated cells
  • 8stem cell
Organ
  • 390liver
  • 61blood
  • 61bodily fluid
  • 52pancreas
  • 38epithelium
  • 14artery
  • 14blood vessel
  • 14heart
  • 14vasculature
  • 13kidney
  • 1mammary gland
Project
  • 532AMP
  • 7T1D
Genome assembly (visualization)
  • 431hg19
  • 365GRCh38
Lab
  • 514AMP-T2D consortium
  • 20Bing Ren, UCSD
  • 5Kyle Gaulton, UCSD
Audit category:
  • 49inconsistent ontology term
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

539 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
HiChIP
WGBS
whole genome sequencing assay
cell line
HepG2378125211
GM12878601
EndoC_BH115191322
Panc11311
smooth muscle cell of the coronary artery68
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego