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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 93total RNA-seq
  • 68ChIP-seq
  • 26ATAC-seq
  • 2Capture-C
  • 2Hi-C
  • 2HiChIP
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 95Transcription
  • 68DNA binding
  • 26DNA accessibility
  • 23D chromatin structure
  • 1DNA sequencing
Target of assay
  • 39control
  • 16transcription factor
  • 13histone
  • 13histone modification
  • 7broad histone mark
  • 6narrow histone mark
  • 3RNA binding protein
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 92February, 2021
  • 30August, 2021
  • 26November, 2017
  • 20May, 2021
  • 16November, 2019
  • 3February, 2023
  • 3November, 2018
  • 2January, 2019
  • 2March, 2023
  • 2October, 2019
  • 1January, 2018
  • 1March, 2020
  • 1October, 2022
Available data
  • 145bam
  • 117bigWig
  • 93tsv
  • 37bed narrowPeak
  • 31fastq
  • 6tagAlign
  • 2bedpe bed3+
  • 2bigBed narrowPeak
  • 2hic
  • 1txt
  • 1vcf
Organism
  • 195Homo sapiens
Biosample type
  • 2666tissue
  • 914primary cell
  • 323in vitro differentiated cells
  • 199cell line
  • 7stem cell
Organ
  • 67pancreas
  • 65epithelium
  • 64artery
  • 64blood vessel
  • 64heart
  • 64vasculature
  • 54liver
  • 5blood
  • 5bodily fluid
Project
  • 195AMP
  • 2T1D
  • 2community
Genome assembly (visualization)
  • 128hg19
  • 109GRCh38
Lab
  • 167AMP-T2D consortium
  • 28Bing Ren, UCSD
  • 2Anna Gloyn, Oxford
  • 2Kyle Gaulton, UCSD
Audit category:
  • 65inconsistent ontology term
Audit category:
  • 1missing controlled_by
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

199 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
Capture-C
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
STARR-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
EndoC_BH13113172121
smooth muscle cell of the coronary artery5248
HepG294311
GM1287841
EndoC-BH111
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