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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
68
ChIP-seq
26
ATAC-seq
2
Capture-C
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
95
Transcription
68
DNA binding
26
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
39
control
16
transcription factor
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
3
RNA binding protein
2
chromatin remodeller
1
recombinant protein
Date released
92
February, 2021
30
August, 2021
26
November, 2017
20
May, 2021
16
November, 2019
3
February, 2023
3
November, 2018
2
January, 2019
2
March, 2023
2
October, 2019
1
January, 2018
1
March, 2020
1
October, 2022
Available data
145
bam
117
bigWig
93
tsv
37
bed narrowPeak
31
fastq
6
tagAlign
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
1
txt
1
vcf
Organism
195
Homo sapiens
Biosample type
2666
tissue
914
primary cell
323
in vitro differentiated cells
199
cell line
7
stem cell
Organ
67
pancreas
65
epithelium
64
artery
64
blood vessel
64
heart
64
vasculature
54
liver
5
blood
5
bodily fluid
Project
195
AMP
2
T1D
2
community
Genome assembly (visualization)
128
hg19
109
GRCh38
Lab
167
AMP-T2D consortium
28
Bing Ren, UCSD
2
Anna Gloyn, Oxford
2
Kyle Gaulton, UCSD
Audit category:
65
inconsistent ontology term
Audit category:
1
missing controlled_by
replication_type!
isogenic
BIOSAMPLE
ASSAY
199 results
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total RNA-seq
ChIP-seq
ATAC-seq
Capture-C
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
STARR-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
EndoC_BH1
31
13
17
2
1
2
1
smooth muscle cell of the coronary artery
52
4
8
HepG2
9
43
1
1
GM12878
4
1
EndoC-BH1
1
1
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