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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
416
ChIP-seq
20
total RNA-seq
6
MeRIP-seq
6
pCHi-C
4
STARR-seq
3
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
DNase-seq
2
Hi-C
1
WGBS
Assay category
416
DNA binding
20
Transcription
5
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
345
transcription factor
88
recombinant protein
62
RNA binding protein
44
control
28
chromatin remodeller
25
histone
25
histone modification
13
narrow histone mark
12
broad histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
289
November, 2017
58
November, 2018
28
December, 2018
28
October, 2019
21
January, 2019
14
August, 2021
10
March, 2020
6
November, 2020
4
February, 2021
3
February, 2023
1
May, 2020
1
May, 2021
Available data
437
bam
405
bigWig
396
fastq
367
bed narrowPeak
353
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
26
tsv
14
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
463
Homo sapiens
Biosample type
476
primary cell
463
cell line
353
tissue
183
in vitro differentiated cells
4
stem cell
Organ
347
liver
56
blood
56
bodily fluid
25
pancreas
19
kidney
14
epithelium
8
embryo
2
artery
2
blood vessel
2
heart
2
vasculature
1
mammary gland
Project
456
AMP
7
T1D
Genome assembly (visualization)
402
hg19
355
GRCh38
Lab
448
AMP-T2D consortium
6
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
3
Kyle Gaulton, UCSD
Audit category:
27
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
replication_type!
unreplicated
BIOSAMPLE
ASSAY
463 results
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ChIP-seq
total RNA-seq
MeRIP-seq
pCHi-C
STARR-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
DNase-seq
Hi-C
WGBS
cell line
HepG2
335
5
2
2
1
1
1
GM12878
56
EndoC_BH1
2
2
6
2
3
Panc1
11
1
1
H1-hESC
8
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