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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 416ChIP-seq
  • 20total RNA-seq
  • 6MeRIP-seq
  • 6pCHi-C
  • 4STARR-seq
  • 3ATAC-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2DNase-seq
  • 2Hi-C
  • 1WGBS
Assay category
  • 416DNA binding
  • 20Transcription
  • 5DNA accessibility
  • 23D chromatin structure
  • 1DNA methylation
Target of assay
  • 345transcription factor
  • 88recombinant protein
  • 62RNA binding protein
  • 44control
  • 28chromatin remodeller
  • 25histone
  • 25histone modification
  • 13narrow histone mark
  • 12broad histone mark
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 289November, 2017
  • 58November, 2018
  • 28December, 2018
  • 28October, 2019
  • 21January, 2019
  • 14August, 2021
  • 10March, 2020
  • 6November, 2020
  • 4February, 2021
  • 3February, 2023
  • 1May, 2020
  • 1May, 2021
Available data
  • 437bam
  • 405bigWig
  • 396fastq
  • 367bed narrowPeak
  • 353bigBed narrowPeak
  • 59bed broadPeak
  • 59bigBed broadPeak
  • 26tsv
  • 14tagAlign
  • 3bed bed3+
  • 3tar
  • 1bed bed3
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hdf5
Organism
  • 463Homo sapiens
Biosample type
  • 476primary cell
  • 463cell line
  • 353tissue
  • 183in vitro differentiated cells
  • 4stem cell
Organ
  • 347liver
  • 56blood
  • 56bodily fluid
  • 25pancreas
  • 19kidney
  • 14epithelium
  • 8embryo
  • 2artery
  • 2blood vessel
  • 2heart
  • 2vasculature
  • 1mammary gland
Project
  • 456AMP
  • 7T1D
Genome assembly (visualization)
  • 402hg19
  • 355GRCh38
Lab
  • 448AMP-T2D consortium
  • 6Bing Ren, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 3Kyle Gaulton, UCSD
Audit category:
  • 27inconsistent ontology term
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

463 results

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Clear Filters
ChIP-seq
total RNA-seq
MeRIP-seq
pCHi-C
STARR-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
DNase-seq
Hi-C
WGBS
cell line
HepG2335522111
GM1287856
EndoC_BH122623
Panc11111
H1-hESC8
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