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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 404ChIP-seq
  • 113total RNA-seq
  • 29ATAC-seq
  • 6pCHi-C
  • 5STARR-seq
  • 4Hi-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3MeRIP-seq
  • 2Capture-C
  • 2DNase-seq
  • 2HiChIP
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1MPRA
  • 1WGBS
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 404DNA binding
  • 115Transcription
  • 31DNA accessibility
  • 43D chromatin structure
  • 1DNA methylation
  • 1DNA sequencing
Target of assay
  • 361transcription factor
  • 89recombinant protein
  • control
  • 65RNA binding protein
  • 38histone
  • 38histone modification
  • 30chromatin remodeller
  • 19broad histone mark
  • 19narrow histone mark
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 259November, 2017
  • 93February, 2021
  • 58November, 2018
  • 40August, 2021
  • 28December, 2018
  • 21May, 2021
  • 21October, 2019
  • 20January, 2019
  • 14November, 2019
  • 11March, 2020
  • 6February, 2023
  • 3November, 2020
  • 2March, 2023
  • 1January, 2018
  • 1May, 2020
  • 1October, 2022
Available data
  • 509bigWig
  • 506bam
  • 404bed narrowPeak
  • 365fastq
  • 355bigBed narrowPeak
  • 119tsv
  • 59bed broadPeak
  • 59bigBed broadPeak
  • 16tagAlign
  • 3bed bed3+
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hdf5
  • 1txt
  • 1vcf
Organism
  • 575Homo sapiens
Biosample type
  • 2590tissue
  • 1053primary cell
  • 579cell line
  • 357in vitro differentiated cells
  • 9stem cell
Organ
  • 341liver
  • 81pancreas
  • 74epithelium
  • 64artery
  • 64blood vessel
  • 64heart
  • 64vasculature
  • 55blood
  • 55bodily fluid
  • 16kidney
  • 8embryo
  • 1mammary gland
Project
  • 568AMP
  • 9T1D
  • 2community
Genome assembly (visualization)
  • 517hg19
  • 464GRCh38
Lab
  • 539AMP-T2D consortium
  • 30Bing Ren, UCSD
  • 5Kyle Gaulton, UCSD
  • 3Rohit N. Kulkarni, M.D., Ph.D.
  • 2Anna Gloyn, Oxford
Audit category:
  • 84inconsistent ontology term
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
target.investigated_as!
  • control
BIOSAMPLE
ASSAY

579 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
MeRIP-seq
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
WGBS
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG231814122211
EndoC_BH1133319133221
smooth muscle cell of the coronary artery4528
GM12878541
Panc1711
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