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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 361ChIP-seq
Assay category
  • 361DNA binding
Target of assay
  • 361transcription factor
  • 89recombinant protein
  • 83control
  • 65RNA binding protein
  • 38histone
  • 38histone modification
  • 30chromatin remodeller
  • 19broad histone mark
  • 19narrow histone mark
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 241November, 2017
  • 57November, 2018
  • 25December, 2018
  • 14January, 2019
  • 11August, 2021
  • 7October, 2019
  • 5February, 2021
  • 1November, 2019
Available data
  • 356bigWig
  • 352bed narrowPeak
  • 349bam
  • 337fastq
  • 328bigBed narrowPeak
  • 44bed broadPeak
  • 44bigBed broadPeak
  • 5tagAlign
  • 3tar
Organism
  • 361Homo sapiens
Biosample type
  • 361cell line
  • 94tissue
  • 49in vitro differentiated cells
  • 10primary cell
Organ
  • 297liver
  • 51blood
  • 51bodily fluid
  • 7kidney
  • 4artery
  • 4blood vessel
  • 4heart
  • 4vasculature
  • 1epithelium
  • 1pancreas
Project
  • 361AMP
Genome assembly (visualization)
  • 352hg19
  • 309GRCh38
Lab
  • 350AMP-T2D consortium
  • 11Bing Ren, UCSD
Audit category:
  • 8inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 12missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

361 results

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Clear Filters
ChIP-seq
cell line
HepG2297
GM1287851
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
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