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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
136
total RNA-seq
42
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
198
DNA binding
138
Transcription
43
DNA accessibility
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
6
October, 2019
5
November, 2019
4
January, 2018
4
March, 2020
2
December, 2019
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
387
Homo sapiens
Biosample type
2766
tissue
primary cell
660
cell line
387
in vitro differentiated cells
10
stem cell
Organ
96
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
387
AMP
Genome assembly (visualization)
291
hg19
265
GRCh38
4
hg18
Lab
333
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
biosample_type!
primary cell
files.file_type!
bedpe bed3+
organ_slims!
esophagus
BIOSAMPLE
ASSAY
387 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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