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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
52
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
155
DNA binding
54
Transcription
38
DNA accessibility
4
3D chromatin structure
Target of assay
91
histone
91
histone modification
46
broad histone mark
44
narrow histone mark
33
transcription factor
31
control
6
RNA binding protein
3
chromatin remodeller
Date released
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
206
bam
170
bigWig
141
fastq
127
bed narrowPeak
52
tsv
34
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
262
Homo sapiens
Biosample type
2712
tissue
primary cell
641
cell line
262
in vitro differentiated cells
10
stem cell
Organ
96
connective tissue
27
embryo
19
epithelium
15
liver
1
adipose tissue
Project
262
AMP
Genome assembly (visualization)
208
hg19
181
GRCh38
4
hg18
Lab
255
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
47
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
biosample_type!
primary cell
month_released!
May, 2021
organ_slims!
spleen
BIOSAMPLE
ASSAY
262 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
8
1
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
hepatocyte
15
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