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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
ChIP-seq
134
total RNA-seq
34
ATAC-seq
5
pCHi-C
4
GRO-seq
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
179
DNA binding
136
Transcription
35
DNA accessibility
2
3D chromatin structure
Target of assay
104
histone
104
histone modification
52
broad histone mark
51
narrow histone mark
43
transcription factor
32
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
61
August, 2017
40
August, 2021
39
February, 2018
31
December, 2017
26
February, 2021
12
February, 2023
8
March, 2020
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
287
bam
255
bigWig
141
fastq
130
bed narrowPeak
129
tsv
40
tagAlign
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
5
bedpe bed3+
3
txt
2
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
361
Homo sapiens
Biosample type
2334
tissue
988
primary cell
631
cell line
361
in vitro differentiated cells
stem cell
Organ
82
connective tissue
26
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
361
AMP
Genome assembly (visualization)
264
hg19
242
GRCh38
4
hg18
Lab
309
AMP-T2D consortium
47
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
107
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
9
inconsistent control read length
biosample_type!
stem cell
files.file_type!
bed bed3+
month_released!
June, 2019
October, 2019
BIOSAMPLE
ASSAY
361 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
60
5
5
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
15
4
1
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