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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
total RNA-seq
86
ChIP-seq
38
ATAC-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
116
Transcription
86
DNA binding
39
DNA accessibility
Target of assay
112
histone
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
111
May, 2021
31
August, 2017
28
August, 2021
February, 2021
23
February, 2018
19
December, 2017
16
February, 2023
6
October, 2019
5
November, 2019
4
January, 2018
4
March, 2020
2
December, 2019
Available data
190
bam
159
bigWig
109
tsv
76
fastq
54
bed narrowPeak
17
bed bed3+
14
tagAlign
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
bed bedgraph
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
249
Homo sapiens
Biosample type
1594
tissue
799
primary cell
526
cell line
249
in vitro differentiated cells
stem cell
Organ
51
connective tissue
17
embryo
9
epithelium
3
liver
2
pancreas
1
heart
Project
249
AMP
Genome assembly (visualization)
188
hg19
165
GRCh38
4
hg18
Lab
215
AMP-T2D consortium
27
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
89
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
biosample_type!
stem cell
files.file_type!
bedpe bed3+
month_released!
February, 2021
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
249 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
Capture-C
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
1
30
4
1
1
embryonic stem cell
7
18
6
1
neural progenitor cell
7
7
10
pancreatic endoderm
4
8
1
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