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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
15
total RNA-seq
4
GRO-seq
1
DNase-seq
1
pCHi-C
Assay category
52
DNA binding
15
Transcription
1
DNA accessibility
Target of assay
53
histone
histone modification
31
transcription factor
28
narrow histone mark
24
broad histone mark
21
control
4
RNA binding protein
2
chromatin remodeller
Date released
29
August, 2017
23
February, 2018
16
December, 2017
4
January, 2018
1
August, 2018
Available data
209
bam
179
bigWig
131
tsv
73
fastq
52
bed narrowPeak
17
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
73
Homo sapiens
Biosample type
336
primary cell
238
tissue
73
in vitro differentiated cells
59
cell line
stem cell
Organ
30
connective tissue
15
embryo
5
epithelium
liver
1
adipose tissue
Project
73
AMP
Genome assembly (visualization)
52
GRCh38
52
hg19
4
hg18
Lab
73
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
biosample_type!
stem cell
organ_slims!
liver
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
total RNA-seq
GRO-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
28
1
pancreatic endoderm
8
4
1
definitive endodermal cell
4
2
1
primitive gut cell
4
2
1
Posterior foregut
3
1
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