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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
134
total RNA-seq
38
ATAC-seq
4
GRO-seq
4
pCHi-C
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
198
DNA binding
136
Transcription
39
DNA accessibility
2
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
68
August, 2017
43
December, 2017
42
August, 2021
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
Available data
287
bam
255
bigWig
140
fastq
130
bed narrowPeak
129
tsv
40
tagAlign
25
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
4
bedpe bed3+
3
txt
2
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
385
Homo sapiens
Biosample type
1886
tissue
997
primary cell
632
cell line
385
in vitro differentiated cells
stem cell
Organ
95
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
adipose tissue
1
heart
Project
385
AMP
Genome assembly (visualization)
289
hg19
261
GRCh38
4
hg18
Lab
331
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
109
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
biosample_type!
stem cell
month_released!
June, 2019
October, 2019
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
385 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
pCHi-C
Capture-C
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
5
6
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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