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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
ChIP-seq
Assay category
110
DNA binding
Target of assay
215
histone
215
histone modification
110
narrow histone mark
104
broad histone mark
64
control
47
transcription factor
16
RNA binding protein
4
chromatin remodeller
Date released
38
August, 2017
15
September, 2018
13
December, 2017
11
June, 2019
9
August, 2021
9
October, 2019
8
February, 2018
3
May, 2021
3
November, 2017
1
May, 2019
Available data
104
bam
102
bigWig
94
bed narrowPeak
73
fastq
31
bigBed narrowPeak
19
tagAlign
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
Organism
110
Homo sapiens
Biosample type
324
tissue
65
primary cell
45
in vitro differentiated cells
cell line
1
stem cell
Organ
43
epithelium
32
pancreas
20
connective tissue
8
embryo
8
vasculature
7
blood vessel
7
liver
6
vein
5
kidney
4
musculature of body
3
brain
2
heart
1
eye
Project
110
AMP
Genome assembly (visualization)
102
GRCh38
102
hg19
Lab
110
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
Audit category:
24
missing controlled_by
Audit category:
7
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
biosample_type!
cell line
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
primary cell
pancreatic endocrine cell
12
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
skeletal muscle myoblast
6
epithelial cell of proximal tubule
4
+ See 16 more…
in vitro differentiated cells
adipocyte
16
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
Hepatic endoderm
2
+ See 7 more…
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